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This commit is contained in:
Tanushree Tunstall 2022-01-26 11:34:59 +00:00
parent 1c1e98ad4f
commit b133b8be24
4 changed files with 5 additions and 20 deletions
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5
scripts/functions/tests/test_logo_plots.R
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@ -1,11 +1,11 @@
#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/pnca.R")
source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/config/katg.R")
#source("~/git/LSHTM_analysis/config/alr.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
#---------------------------------------------------
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
################################
# Logo plot with custom Y axis
@ -70,7 +70,6 @@
# specify {plot_positions}
# To plot entire MSA, simply don't specify {plot_positions}
# script: logoP_msa.R
# TODO: Add scaled data option
########################################
# LogoPlotMSA(msaSeq_mut = msa_seq
# , msaSeq_wt = wt_seq