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updated minor changes

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Tanushree Tunstall 2021-02-10 10:37:44 +00:00
parent 8d0bd8011f
commit af1446253b
1 changed files with 2 additions and 1 deletions
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foldx/test2/testing_foldx_cmds
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@ -3,9 +3,10 @@
============
# Example 1: pnca
# Delete processing output, copy rotabase.txt and individual_list_3pl1.txt in place, run a test
# get files from test/
============
#
clear; rm -rf test2_process/*; cp individual_list_3pl1.txt test2_process/ ; cp rotabase.txt test2_process/; ./runFoldx_test2.py -g pncA --datadir /home/tanu/git/LSHTM_analysis/foldx/test2 -i /home/tanu/git/LSHTM_analysis/foldx/test2 -o /home/tanu/git/LSHTM_analysis/foldx/test2/test2_output -p ./test2_process -pdb 3pl1.pdb -m /tmp/pnca_muts_sample.csv -c1 A
clear; rm -rf test2_process/*; cp individual_list_3pl1.txt test2_process/ ; cp rotabase.txt test2_process/; ./runFoldx_test2.py -g pncA --datadir /home/tanu/git/LSHTM_analysis/foldx/test2 -i /home/tanu/git/LSHTM_analysis/foldx/test2 -o /home/tanu/git/LSHTM_analysis/foldx/test2/test2_output -p ./test2_process -pdb 3pl1.pdb -m /tmp/pnca_test_muts.csv -c1 A
============
# Example 2: gidb