diff --git a/README.md b/README.md
index ddb5528..f60661d 100644
--- a/README.md
+++ b/README.md
@@ -1,9 +1,15 @@
-mCSM Analysis
+mCSM
 =============
 
 This contains scripts that does the following:
- 1. mCSM analysis: using bash, python and R
- 2. meta data analysis: using python and R
+ 1. mcsm.py: function for submitting mcsm job and extracting results
+ 2. run_mcsm.py: wrapper to call mcsm.py
+ 
+foldx
+=============
+This contains scripts that does the following:
+ 1. runFoldx.py: submitting foldx requests and extracting results
+ 2. runfoldx.sh: is wrapped by runFoldx.py 
  
 Requires an additional 'Data' directory. Batteries not included:-)
 
@@ -17,18 +23,18 @@ Requires an additional 'Data' directory. Batteries not included:-)
 subdirs within this repo
 
 ```
- meta\_data\_analysis/
+ scripts
  	*.R
  	*.py
+	<plotting>/
+	*.R
+
 	
- mcsm_analysis
+ mcsm
 #	<drug>/
 
- foldx_analysis
- 
- plotting
- 	*.R
- 
+ foldx
+  
 ```
 
 More docs here as I write them.