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indicated which cols are not available for pnca as I ran these scripts for generating plots for the poster

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Tanushree Tunstall 2021-07-07 13:12:29 +01:00
parent 55adc3fa60
commit a9119d7f03
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scripts/plotting/get_plotting_dfs.R
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@ -102,7 +102,7 @@ cols_to_select = c("mutationinformation", "drtype"
, "duet_stability_change", "duet_outcome", "duet_scaled" , "duet_stability_change", "duet_outcome", "duet_scaled"
, "ligand_affinity_change", "ligand_outcome", "affinity_scaled" , "ligand_affinity_change", "ligand_outcome", "affinity_scaled"
, "ddg", "foldx_scaled", "foldx_outcome" , "ddg", "foldx_scaled", "foldx_outcome"
#, "deepddg", "deepddg_outcome" , "deepddg", "deepddg_outcome" # comment out as not available for pnca
, "asa", "rsa", "rd_values", "kd_values" , "asa", "rsa", "rd_values", "kd_values"
, "af", "or_mychisq", "pval_fisher" , "af", "or_mychisq", "pval_fisher"
, "or_fisher", "or_logistic", "pval_logistic" , "or_fisher", "or_logistic", "pval_logistic"