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added cmd option for dynamut2 formatting results

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This commit is contained in:
Tanushree Tunstall 2021-10-18 13:52:29 +01:00
parent c5c4d74acf
commit a67a07db2d
7 changed files with 65 additions and 16 deletions
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6
dynamut/run_get_results_dynamut.py
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@ -17,8 +17,8 @@ my_host = 'http://biosig.unimelb.edu.au'
#headers = {"User-Agent":"Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_4) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/83.0.4103.97 Safari/537.36"}
# TODO: add cmd line args
#gene = 'gid'
drug = 'streptomycin'
# gene =
# drug =
datadir = homedir + '/git/Data/'
indir = datadir + drug + '/input/'
outdir = datadir + drug + '/output/'
@ -41,4 +41,4 @@ get_results(url_file = my_url_file
, output_dir = outdir
, outfile_suffix = my_suffix)
########################################################################
########################################################################