tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

added tar.gz download within get_results.py

Browse source
This commit is contained in:
Tanushree Tunstall 2021-02-12 15:24:51 +00:00
parent deb0aa8e58
commit a5f1878158
4 changed files with 32 additions and 9 deletions
Download patch file Download diff file Expand all files Collapse all files

17
dynamut/examples.py
View file

@ -61,7 +61,7 @@ get_results(url_file = my_url_file_multiple
# example 2: single url in a file
#----------------------------------------------
my_url_file_single = homedir + '/git/LSHTM_analysis/dynamut/dynamut_temp/dynamut_result_url_batch_single.txt'
print(my_url_file_multiple)
print(my_url_file_single)
my_suffix = 'single'
get_results(my_url_file_single
@ -69,3 +69,18 @@ get_results(my_url_file_single
, output_dir = my_outdir
, outfile_suffix = my_suffix)
#%%###################################################################
url = 'http://biosig.unimelb.edu.au/dynamut/results_prediction/161296287365'
host_url = 'http://biosig.unimelb.edu.au'
prediction_number = re.search(r'([0-9]+$)', url).group(0)
print(prediction_number)
dynamut_results_dir = '/home/tanu/git/LSHTM_analysis/dynamut/dynamut_results'
tgz_url = f"{host_url}/dynamut/results_file/results_" + prediction_number + '.tar.gz'
print(tgz_url)
outfile_suffix = 'foo'
target_path = dynamut_results_dir + '/' + outfile_suffix + '_results_' + prediction_number + '.tar.gz'
response_tgz = requests.get(tgz_url, stream = True)
if response_tgz.status_code == 200:
with open(target_path, 'wb') as f:
f.write(response_tgz.raw.read())