tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

renamed count_vars_ML previous version as such

Browse source
This commit is contained in:
Tanushree Tunstall 2022-08-31 22:02:16 +01:00
parent 14e655eeeb
commit a5d22540e1
9 changed files with 336 additions and 185 deletions
Download patch file Download diff file Expand all files Collapse all files

4
scripts/plotting/plotting_thesis/embb/basic_barplots_embb.R
View file

@ -7,8 +7,8 @@
#=============
# Data: Input
#==============
#source("~/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
source("~/git/LSHTM_analysis/config/embb.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#cat("\nSourced plotting cols as well:", length(plotting_cols))

5
scripts/plotting/plotting_thesis/embb/gg_pairs_all_embb.R
View file

@ -1,5 +1,4 @@
#source("~/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/scripts/plotting/plotting_colnames.R")
#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
my_gg_pairs=function(plot_df, plot_title
@ -53,7 +52,7 @@ corr_plotdf = corr_data_extract(merged_df3
aff_dist_cols = colnames(corr_plotdf)[grep("Dist", colnames(corr_plotdf))]
static_cols = c("Log10(MAF)"
, "Log10(OR)"
#, "Log10(OR)"
)
############################################################
#=============================================
@ -85,7 +84,7 @@ unmasked_vals
# Stability
#================
corr_ps_colnames = c(static_cols
, "DUET"
, "mCSM-DUET"
, "FoldX"
, "DeepDDG"
, "Dynamut2"