tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

dynamut retrieved b5 and b6, submitted 6 and 7

Browse source
This commit is contained in:
Tanushree Tunstall 2021-02-20 13:05:30 +00:00
parent 2995299179
commit 9f03e6a6fd
2 changed files with 13 additions and 12 deletions
Download patch file Download diff file Expand all files Collapse all files

13
dynamut/run_get_results_dynamut.py
View file

@ -24,13 +24,14 @@ indir = datadir + '/' + drug + '/input'
outdir = datadir + '/' + drug + '/output'
#==============================================================================
# batch 4: 03.txt, # RETRIEVED
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b4.txt'
my_suffix = 'gid_b4'
# batch 6: 05.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b6.txt'
#my_suffix = 'gid_b6'
# batch 7: 06.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b7.txt'
#my_suffix = 'gid_b7'
# batch 5: 04.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b5.txt'
#my_suffix = 'gid_b5'
#==============================================================================
#==========================

12
dynamut/run_submit_dynamut.py
View file

@ -29,13 +29,13 @@ my_email = 'tanushree.tunstall@lshtm.ac.uk'
my_pdb_file = indir + '/gid_complex.pdb'
#==============================================================================
# batch 4: 03.txt, # RAN: 18 Feb, ~11:19
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_03.txt'
#my_suffix = 'gid_b4'
# batch 6: 05.txt, # RAN:
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_05.txt'
#my_suffix = 'gid_b6'
# batch 5: 04.txt, # RAN: 18 Feb, ~11:21
#my_mutation_list = outdir + '/snp_batches/50/snp_batch_04.txt'
#my_suffix = 'gid_b5'
# batch 7: 06.txt, # RAN:
my_mutation_list = outdir + '/snp_batches/50/snp_batch_06.txt'
my_suffix = 'gid_b7'
#==============================================================================
#==========================