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added plotting_globals and text file with info on how to run plotting scripst

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Tanushree Tunstall 2021-06-04 17:26:01 +01:00
parent a5715bcccc
commit 9af0249e0e
2 changed files with 78 additions and 0 deletions
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scripts/plotting/running_plotting_scripts.txt Normal file
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#========
# basic_barplots_PS.R:
#========
Rscript basic_barplots_PS.R
# Calls 'plotting_data.R' --> calls 'dirs.R'
'Plotting_data.R':
#drug = opt$drug
#gene = opt$gene
# hardcoding when not using cmd
drug = "streptomycin"
gene = "gid"
#TODO
making such that cmd line agrs are passed to basic_barplots_PS.R for gene, drug and maybe input file
and then these call functions
Delete: dirs.R
after grepping
barplots_subcolours_aa_combined.R:source("dirs.R")
basic_barplots_PS.R:source("dirs.R")
resolving_ambiguous_muts.R:source("dirs.R")
#=======================================================================