diff --git a/config/alr.R b/config/alr.R
index 3543b9a..8e14b05 100644
--- a/config/alr.R
+++ b/config/alr.R
@@ -144,4 +144,4 @@ aa_pos_lig2 = NULL
 aa_pos_lig3 = NULL
 
 tile_map=data.frame(tile=c("ALR","PLP"),
-                    tile_colour=c("green","darkslategrey"))
\ No newline at end of file
+                    tile_colour=c("green","navyblue")) #darkslategrey
\ No newline at end of file
diff --git a/config/katg.R b/config/katg.R
index 89506b5..753584b 100644
--- a/config/katg.R
+++ b/config/katg.R
@@ -106,6 +106,11 @@ cat("\n==================================================="
 aa_pos_lig1 = aa_pos_hem
 aa_pos_lig2 = NULL
 aa_pos_lig3 = NULL
-tile_map=data.frame(tile=c("KAT","DPA","CDL","Ca"),
-                    tile_colour=c("green","darkslategrey","navyblue","purple"))
+tile_map=data.frame(tile=c("INH","HAEM"),
+                    tile_colour=c("green","darkslategrey"))
 
+
+
+#toString(aa_pos_hem)
+#toString(aa_pos_drug)
+#toString(active_aa_pos)
diff --git a/scripts/plotting/plotting_thesis/alr/basic_barplots_alr.R b/scripts/plotting/plotting_thesis/alr/basic_barplots_alr.R
index 50001a5..a7b9371 100644
--- a/scripts/plotting/plotting_thesis/alr/basic_barplots_alr.R
+++ b/scripts/plotting/plotting_thesis/alr/basic_barplots_alr.R
@@ -7,9 +7,8 @@
 #=============
 # Data: Input
 #==============
-#source("~/git/LSHTM_analysis/config/katg.R")
-#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
-
+source("~/git/LSHTM_analysis/config/alr.R")
+source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
 #cat("\nSourced plotting cols as well:", length(plotting_cols))
 
 ####################################################
diff --git a/scripts/plotting/plotting_thesis/gid/prominent_effects_gid.R b/scripts/plotting/plotting_thesis/gid/prominent_effects_gid.R
index db82d86..65b3ba5 100644
--- a/scripts/plotting/plotting_thesis/gid/prominent_effects_gid.R
+++ b/scripts/plotting/plotting_thesis/gid/prominent_effects_gid.R
@@ -274,6 +274,8 @@ if (nrow(dd_lig) == table(str_df_plot_cols$pe_effect_outcome)[['DD_lig']]){
 }else{
   stop("Abort: DD affinity colour numbers mismtatch")
 }
+paste0(dd_lig_pos,chain_suffix)
+toString(paste0(dd_lig_pos,chain_suffix))
 
 # +ve Lig Aff
 ss_lig            = str_df_plot_cols[str_df_plot_cols$pe_effect_outcome=="SS_lig",]
@@ -284,8 +286,8 @@ if (nrow(ss_lig)  == table(str_df_plot_cols$pe_effect_outcome)[['SS_lig']]){
   stop("Abort: SS affinity colour numbers mismtatch")
 }
   #put in chimera cmd
-  paste0(dd_lig_pos,chain_suffix)
   paste0(ss_lig_pos,chain_suffix)
+  toString(paste0(ss_lig_pos,chain_suffix))
 
 }
 
@@ -310,8 +312,8 @@ if (nrow(ss_nca)  == table(str_df_plot_cols$pe_effect_outcome)[['SS_nucleic_acid
 }
 
 #put in chimera cmd
-paste0(dd_nca_pos, chain_suffix)
-paste0(ss_nca_pos, chain_suffix)
+toString(paste0(dd_nca_pos, chain_suffix))
+toString(paste0(ss_nca_pos, chain_suffix))
 
 #=========================================================
 #------------------------
@@ -335,7 +337,7 @@ if (nrow(ss_stability)  == table(str_df_plot_cols$pe_effect_outcome)[['SS_stabil
 
 #put in chimera cmd
 # stabiliting first as it has less numbers
-paste0(ss_stability_pos, chain_suffix)
-paste0(dd_stability_pos, chain_suffix)
+toString(paste0(dd_stability_pos, chain_suffix))
+toString(paste0(ss_stability_pos, chain_suffix))
 ####################################################################
 
diff --git a/scripts/plotting/plotting_thesis/katg/basic_barplots_katg.R b/scripts/plotting/plotting_thesis/katg/basic_barplots_katg.R
index 50001a5..0ed96e5 100644
--- a/scripts/plotting/plotting_thesis/katg/basic_barplots_katg.R
+++ b/scripts/plotting/plotting_thesis/katg/basic_barplots_katg.R
@@ -7,8 +7,8 @@
 #=============
 # Data: Input
 #==============
-#source("~/git/LSHTM_analysis/config/katg.R")
-#source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
+source("~/git/LSHTM_analysis/config/katg.R")
+source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
 
 #cat("\nSourced plotting cols as well:", length(plotting_cols))
 
diff --git a/scripts/plotting/plotting_thesis/katg/prominent_effects_katg.R b/scripts/plotting/plotting_thesis/katg/prominent_effects_katg.R
index 0bd5e92..627bd58 100644
--- a/scripts/plotting/plotting_thesis/katg/prominent_effects_katg.R
+++ b/scripts/plotting/plotting_thesis/katg/prominent_effects_katg.R
@@ -262,6 +262,8 @@ if (nrow(dd_lig) == table(str_df_plot_cols$pe_effect_outcome)[['DD_lig']]){
 }else{
   stop("Abort: DD affinity colour numbers mismtatch")
 }
+toString(paste0(dd_lig_pos, chain_suffix))
+
 
 # +ve Lig Aff
 ss_lig            = str_df_plot_cols[str_df_plot_cols$pe_effect_outcome=="SS_lig",]
@@ -272,13 +274,10 @@ if (!empty(ss_lig)){
     stop("Abort: SS affinity colour numbers mismtatch")
   } 
   #put in chimera cmd
-  paste0(dd_lig_pos, chain_suffix)
-  paste0(ss_lig_pos, chain_suffix)
+  toString(paste0(ss_lig_pos, chain_suffix))
 }
 
 
-
-
 #===================================================
 #-------------------
 # PPI2 Affinity
@@ -300,8 +299,8 @@ if (nrow(ss_ppi2)  == table(str_df_plot_cols$pe_effect_outcome)[['SS_ppi2']]){
 }
 
 #put in chimera cmd
-paste0(dd_ppi2_pos,chain_suffix)
-paste0(ss_ppi2_pos,chain_suffix)
+toString(paste0(dd_ppi2_pos,chain_suffix))
+toString(paste0(ss_ppi2_pos,chain_suffix))
 
 #=========================================================
 #------------------------
@@ -324,8 +323,7 @@ if (nrow(ss_stability)  == table(str_df_plot_cols$pe_effect_outcome)[['SS_stabil
 }
 
 #put in chimera cmd
-# stabiliting first as it has less numbers
-paste0(ss_stability_pos, chain_suffix)
-paste0(dd_stability_pos, chain_suffix)
+toString(paste0(dd_stability_pos, chain_suffix))
+toString(paste0(ss_stability_pos, chain_suffix))
 ####################################################################