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added my_logolas.R

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Tanushree Tunstall 2022-01-24 13:46:50 +00:00
parent febb8f0f7f
commit 9aa62b33b1
5 changed files with 1423 additions and 93 deletions
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19
config/gid.R
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@ -2,7 +2,20 @@ gene = "gid"
drug = "streptomycin"
rna_bind_aa_pos = c(96, 97, 118, 163)
bin_aa_pos = c(48, 51, 137, 200)
active_aa_pos = c(rna_bind_aa_pos, bin_aa_pos)
binding_aa_pos = c(48, 51, 137, 200)
active_aa_pos = sort(unique(c(rna_bind_aa_pos, binding_aa_pos)))
#rna_site = G518
cat("\nNo. of active site residues for gene"
, gene, ":"
, length(active_aa_pos)
, "\nThese are:\n"
, active_aa_pos)
cat("\n==================================================="
, "\nActive site residues for", gene, "comprise of..."
, "\n==================================================="
, "\nRNA binding residues:"
, rna_bind_aa_pos
, "\nBinding site residues:"
, binding_aa_pos)