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saving dynamut and mcsm_na jobs submitted and retrieved

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This commit is contained in:
Tanushree Tunstall 2021-08-11 17:32:15 +01:00
parent 7c0824d0f2
commit 96277d78f6
13 changed files with 32 additions and 119 deletions
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23
dynamut/run_get_results_dynamut.py Normal file → Executable file
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@ -19,23 +19,20 @@ my_host = 'http://biosig.unimelb.edu.au'
# TODO: add cmd line args
#gene = 'gid'
drug = 'streptomycin'
datadir = homedir + '/git/Data'
indir = datadir + '/' + drug + '/input'
outdir = datadir + '/' + drug + '/output'
datadir = homedir + '/git/Data/'
indir = datadir + drug + '/input/'
outdir = datadir + drug + '/output/'
outdir_dynamut_temp = datadir + drug + '/output/dynamut_results/dynamut_temp/'
#==============================================================================
# batch 8: 07.txt, # RETRIEVED 23 Feb 08:54
# batch 8: 08.txt, # RETRIEVED 23 Feb 08:54
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b8.txt'
#my_suffix = 'gid_b8'
#my_suffix = 'gid_b7'
# batch 9: 08.txt, # RETRIEVED 23 Feb 08:55
my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b9.txt'
my_suffix = 'gid_b9'
# batch 10: 09.txt, # RETRIEVED
#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b10.txt'
#my_suffix = 'gid_b10'
#b09 and b10 failed!
# batch 9: 09.txt,
my_url_file = outdir_dynamut_temp + 'dynamut_result_url_gid_b10_ab.txt'
my_suffix = 'gid_b10_ab'
#==============================================================================
#==========================