saving dynamut and mcsm_na jobs submitted and retrieved
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7c0824d0f2
commit
96277d78f6
13 changed files with 32 additions and 119 deletions
23
dynamut/run_get_results_dynamut.py
Normal file → Executable file
23
dynamut/run_get_results_dynamut.py
Normal file → Executable file
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@ -19,23 +19,20 @@ my_host = 'http://biosig.unimelb.edu.au'
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# TODO: add cmd line args
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#gene = 'gid'
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drug = 'streptomycin'
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datadir = homedir + '/git/Data'
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indir = datadir + '/' + drug + '/input'
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outdir = datadir + '/' + drug + '/output'
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datadir = homedir + '/git/Data/'
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indir = datadir + drug + '/input/'
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outdir = datadir + drug + '/output/'
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outdir_dynamut_temp = datadir + drug + '/output/dynamut_results/dynamut_temp/'
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#==============================================================================
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# batch 8: 07.txt, # RETRIEVED 23 Feb 08:54
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# batch 8: 08.txt, # RETRIEVED 23 Feb 08:54
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#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b8.txt'
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#my_suffix = 'gid_b8'
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#my_suffix = 'gid_b7'
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# batch 9: 08.txt, # RETRIEVED 23 Feb 08:55
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my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b9.txt'
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my_suffix = 'gid_b9'
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# batch 10: 09.txt, # RETRIEVED
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#my_url_file = outdir + '/dynamut_temp/dynamut_result_url_gid_b10.txt'
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#my_suffix = 'gid_b10'
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#b09 and b10 failed!
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# batch 9: 09.txt,
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my_url_file = outdir_dynamut_temp + 'dynamut_result_url_gid_b10_ab.txt'
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my_suffix = 'gid_b10_ab'
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#==============================================================================
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#==========================
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