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added combined lineage plot

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Tanushree Tunstall 2022-08-09 19:33:49 +01:00
parent fe292e3717
commit 94454d6fba
10 changed files with 421 additions and 190 deletions
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42
scripts/Header_TT.R
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@ -224,30 +224,30 @@ consurf_palette2 = c("0" = "yellow2"
consurf_colours = c(
"nsd" = rgb(1.00,1.00,0.59)
, "1" = rgb(0.63,0.16,0.37)
, "2" = rgb(0.94,0.49,0.67)
, "3" = rgb(0.98,0.78,0.86)
, "4" = rgb(0.98,0.92,0.96)
"0" = rgb(1.00,1.00,0.59)
, "9" = rgb(0.63,0.16,0.37)
, "8" = rgb(0.94,0.49,0.67)
, "7" = rgb(0.98,0.78,0.86)
, "6" = rgb(0.98,0.92,0.96)
, "5" = rgb(1.00,1.00,1.00)
, "6" = rgb(0.84,0.94,0.94)
, "7" = rgb(0.65,0.86,0.90)
, "8" = rgb(0.29,0.69,0.75)
, "9" = rgb(0.04,0.49,0.51)
, "4" = rgb(0.84,0.94,0.94)
, "3" = rgb(0.65,0.86,0.90)
, "2" = rgb(0.29,0.69,0.75)
, "1" = rgb(0.04,0.49,0.51)
)
consurf_bp_colours = c(
"0" = rgb(1.00,1.00,0.59)
, "1" = rgb(0.63,0.16,0.37)
, "2" = rgb(0.94,0.49,0.67)
, "3" = rgb(0.98,0.78,0.86)
, "4" = rgb(0.98,0.92,0.96)
, "5" = rgb(1.00,1.00,1.00)
, "6" = rgb(0.84,0.94,0.94)
, "7" = rgb(0.65,0.86,0.90)
, "8" = rgb(0.29,0.69,0.75)
, "9" = rgb(0.04,0.49,0.51)
)
# consurf_bp_colours = c(
# "0" = rgb(1.00,1.00,0.59)
# , "9" = rgb(0.63,0.16,0.37)
# , "8" = rgb(0.94,0.49,0.67)
# , "7" = rgb(0.98,0.78,0.86)
# , "6" = rgb(0.98,0.92,0.96)
# , "5" = rgb(1.00,1.00,1.00)
# , "4" = rgb(0.84,0.94,0.94)
# , "3" = rgb(0.65,0.86,0.90)
# , "2" = rgb(0.29,0.69,0.75)
# , "1" = rgb(0.04,0.49,0.51)
# )
##################################################