tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

extracted results for dynamut gid bissection b10_21

Browse source
This commit is contained in:
Tanushree Tunstall 2021-08-12 17:35:12 +01:00
parent 59a370b45a
commit 938dba7fcc
3 changed files with 16 additions and 11 deletions
Download patch file Download diff file Expand all files Collapse all files

8
mcsm_na/run_format_results_mcsm_na.py
View file

@ -15,7 +15,7 @@ from format_results_mcsm_na import *
# TODO: add cmd line args
#gene = 'gid'
gene = 'gid'
drug = 'streptomycin'
datadir = homedir + '/git/Data'
indir = datadir + '/' + drug + '/input'
@ -23,10 +23,10 @@ outdir = datadir + '/' + drug + '/output'
outdir_na = outdir + '/mcsm_na_results/'
# Input file
infile_mcsm_na = outdir_na + 'gid_output_combined_clean.tsv'
infile_mcsm_na = outdir_na + gene + '_output_combined_clean.tsv'
# Formatted output file
outfile_mcsm_na_f = outdir_na + 'gid_complex_mcsm_na_norm.csv'
outfile_mcsm_na_f = outdir_na + gene + '_complex_mcsm_na_norm.csv'
#==========================
# CALL: format_results_mcsm_na()
@ -45,4 +45,4 @@ print('Finished writing file:'
, '\nExpected no. of cols:', len(mcsm_na_df_f.columns)
, '\n=============================================================')
#%%#####################################################################
#%%#####################################################################