diff --git a/scripts/ml/ml_iterator.py b/scripts/ml/ml_iterator.py index 7231db4..0832708 100755 --- a/scripts/ml/ml_iterator.py +++ b/scripts/ml/ml_iterator.py @@ -41,21 +41,26 @@ gene_model_paramD = {'data_combined_model' : False ############################################################################### #ml_genes = ["pncA", "embB", "katG", "rpoB", "gid"] -ml_gene_drugD = {'pncA' : 'pyrazinamide' - # , 'embB' : 'ethambutol' - # , 'katG' : 'isoniazid' - # , 'rpoB' : 'rifampicin' - # , 'gid' : 'streptomycin' +ml_gene_drugD = { + #'pncA' : 'pyrazinamide' + 'embB' : 'ethambutol' + , 'katG' : 'isoniazid' + , 'rpoB' : 'rifampicin' + , 'gid' : 'streptomycin' } gene_dataD={} -split_types = ['70_30', - '80_20', - 'sl', - 'rt', - 'none_bts'] +split_types = [ + '70_30', + '80_20', + 'sl', + #'rt', + #'none_bts' + ] -split_data_types = ['actual', - 'complete'] +split_data_types = [ + 'actual', + #'complete' + ] for gene, drug in ml_gene_drugD.items(): print ('\nGene:', gene