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ran foldx and mcsm (get) for 33k dataset

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This commit is contained in:
Tanushree Tunstall 2020-07-08 20:30:32 +01:00
parent 172fa18420
commit 8931441fa5
3 changed files with 14 additions and 15 deletions
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8
scripts/data_extraction.py
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@ -73,11 +73,11 @@ arg_parser.add_argument('-g', '--gene', help='gene name (case sensitive)', defau
args = arg_parser.parse_args()
#=======================================================================
#%% variable assignment: input and output paths & filenames
drug = args.drug
gene = args.gene
#drug = args.drug
#gene = args.gene
#drug = 'pyrazinamide'
#gene = 'pncA'
drug = 'pyrazinamide'
gene = 'pncA'
gene_match = gene + '_p.'
print('mut pattern for gene', gene, ':', gene_match)