From 873fd3a121a5e23bed34ad06630287dc67c7e694 Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Tue, 19 Oct 2021 11:12:34 +0100 Subject: [PATCH] added gene.lower to dynamut2 format result script --- dynamut/run_format_results_dynamut.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/dynamut/run_format_results_dynamut.py b/dynamut/run_format_results_dynamut.py index dd9f7fb..cb6fe70 100755 --- a/dynamut/run_format_results_dynamut.py +++ b/dynamut/run_format_results_dynamut.py @@ -66,12 +66,12 @@ outdir_dynamut = outdir + '/dynamut_results/' outdir_dynamut2 = outdir + '/dynamut_results/dynamut2/' # Input file -#infile_dynamut = outdir_dynamut + gene + '_dynamut_all_output_clean.csv' -infile_dynamut2 = outdir_dynamut2 + gene + '_dynamut2_output_combined_clean.csv' +#infile_dynamut = outdir_dynamut + gene.lower() + '_dynamut_all_output_clean.csv' +infile_dynamut2 = outdir_dynamut2 + gene.lower() + '_dynamut2_output_combined_clean.csv' # Formatted output filename #outfile_dynamut_f = outdir_dynamut2 + gene + '_dynamut_norm.csv' -outfile_dynamut2_f = outdir_dynamut2 + gene + '_dynamut2_norm.csv' +outfile_dynamut2_f = outdir_dynamut2 + gene.lower() + '_dynamut2_norm.csv' #=============================== # CALL: format_results_dynamut