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added shell script to format muts for mcsm NA

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Tanushree Tunstall 2021-02-12 17:38:42 +00:00
parent a6f1f65acf
commit 84970a667c
5 changed files with 54 additions and 31 deletions
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dynamut/run_submit.py
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@ -26,7 +26,7 @@ outdir = datadir + '/' + drug + '/output'
my_chain = 'A'
my_email = 'tanushree.tunstall@lshtm.ac.uk'
my_pdb_file = homedir + '/git/Data/streptomycin/input/gid_complex.pdb'
my_pdb_file = indir + '/gid_complex.pdb'
# batch 1: 00.txt
#my_mutation_list =outdir + '/snp_batches/50/snp_batch_00.txt'