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created prominent effect calcualtions

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Tanushree Tunstall 2022-08-10 20:02:20 +01:00
parent 3af11ec3d3
commit 842efe4409
3 changed files with 11 additions and 3 deletions
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3
scripts/functions/combining_dfs_plotting.R
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@ -684,6 +684,9 @@ combining_dfs_plotting <- function( my_df_u
#TODO #TODO
# Choose few columns to return as plot_df # Choose few columns to return as plot_df
#################################################################### ####################################################################
return(list( merged_df2 return(list( merged_df2
, merged_df3 , merged_df3

11
scripts/plotting/plotting_thesis/preformatting.R
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@ -15,9 +15,14 @@ source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/") outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
################################################################### ###################################################################
# FIXME: ADD distance to NA when SP replies # FIXME: ADD distance to NA when SP replies
# DONE: plotting_globals.R
dist_columns = c("ligand_distance", "interface_dist") geneL_normal = c("pnca")
DistCutOff = 10 geneL_na = c("gid", "rpob")
geneL_ppi2 = c("alr", "embb", "katg", "rpob")
# LigDist_colname # from globals used
# ppi2Dist_colname #from globals used
# naDist_colname #from globals used
common_cols = c("mutationinformation" common_cols = c("mutationinformation"
, "X5uhc_position" , "X5uhc_position"

0
scripts/plotting/plotting_thesis/stats.R
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