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tested to make sure the cols added dont break code

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Tanushree Tunstall 2022-09-01 16:23:57 +01:00
parent de9e6a709b
commit 80b4a1850c
2 changed files with 4 additions and 3 deletions
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5
scripts/ml/ml_functions/GetMLData.py
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@ -657,7 +657,8 @@ def getmldata(gene, drug
all_featuresN2 = all_featuresN + ['dst', 'dst_mode'] all_featuresN2 = all_featuresN + ['dst', 'dst_mode']
all_training_df = my_df_ml[all_featuresN2] all_training_df = my_df_ml[all_featuresN2]
print('\nAll feature names:', all_featuresN2) print('\nLength of all ML feature names:', len(all_featuresN2)
, '\nAll feature names:', all_featuresN2)
#################################################################### ####################################################################
#========================================================================== #==========================================================================
@ -670,7 +671,7 @@ def getmldata(gene, drug
#========================================================================== #==========================================================================
if write_outfile: if write_outfile:
print('\nPASS: and now writing processed file for ml:', outFile_ml) print('\nPASS: and now writing processed file for ml:', outFile_ml)
#all_training_df.to_csv(outFile_ml, index = False) all_training_df.to_csv(outFile_ml, index = False)
else: else:
print('\nPASS: But NOT writing processed file') print('\nPASS: But NOT writing processed file')
#========================================================================== #==========================================================================

2
scripts/ml/ml_functions/TEST_GetMLData.py
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@ -12,7 +12,7 @@ getmldata(gene = "alr"
, use_or = False , use_or = False
, omit_all_genomic_features = False , omit_all_genomic_features = False
, write_maskfile = True , write_maskfile = True
, write_outfile = False) , write_outfile = True)
getmldata(gene = "embB" getmldata(gene = "embB"