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adding formatting to get all output from ML for feature grpups starting with genomics

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Tanushree Tunstall 2022-06-21 14:08:12 +01:00
parent cadaed2ba7
commit 7b378ca6f3
4 changed files with 98 additions and 54 deletions
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21
scripts/ml/pnca_config_dissected.py
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@ -49,32 +49,11 @@ print('\nOutput directory:', outdir_ml)
#%%###########################################################################
print('\n================================================================\n')
, '\n\nTotal no. of evolutionary features:' , len(X_evolFN)
, '\n\nTotal no. of stability features:' , len(X_stability_FN)
, '\n--------Common stabilty cols:' , len(X_common_stability_Fnum)
, '\n--------Foldx cols:' , len(X_foldX_Fnum)
, '\n\nTotal no. of affinity features:' , len(X_affinityFN)
, '\n--------Common affinity cols:' , len(common_affinity_Fnum)
, '\n--------Gene specific affinity cols:' , len(gene_affinity_colnames)
, '\n\nTotal no. of residue level features:', len(X_resprop_FN)
, '\n--------AA index cols:' , len(X_aaindex_Fnum)
, '\n--------Residue Prop cols:' , len(X_str_Fnum)
, '\n--------AA change Prop cols:' , len(X_aap_Fcat)
, '\n\nTotal no. of genomic features:' , len(X_genomicFN)
, '\n--------MAF+OR cols:' , len(X_gn_mafor_Fnum)
, '\n--------Lineage cols:' , len(X_gn_linegae_Fnum)
, '\n--------Other cols:' , len(X_gn_Fcat)
X_structural_FN = X_stability_FN + X_affinityFN + X_resprop_FN
X_aaindex_Fnum + X_str_Fnum + X_aap_Fcat
all_featuresN = X_evolFN + X_structural_FN + X_genomicFN
###############################################################################
print('\n================================================================'
, '\nTotal Evolutionary features (n):' , len(X_evolFN)