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minor tweaks

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This commit is contained in:
Tanushree Tunstall 2020-04-08 18:27:09 +01:00
parent fe3d431a3d
commit 7a8bbc6595
4 changed files with 30 additions and 26 deletions
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6
scripts/dssp_df.py
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@ -30,8 +30,10 @@ os.getcwd()
#=======================================================================
#%% command line args
arg_parser = argparse.ArgumentParser()
arg_parser.add_argument('-d', '--drug', help='drug name', default = 'pyrazinamide')
arg_parser.add_argument('-g', '--gene', help='gene name', default = 'pncA') # case sensitive
#arg_parser.add_argument('-d', '--drug', help='drug name', default = 'pyrazinamide')
#arg_parser.add_argument('-g', '--gene', help='gene name', default = 'pncA') # case sensitive
arg_parser.add_argument('-d', '--drug', help='drug name', default = 'TESTDRUG')
arg_parser.add_argument('-g', '--gene', help='gene name (case sensitive)', default = 'testGene') # case sensitive
args = arg_parser.parse_args()
#=======================================================================
#%% variable assignment: input and output