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saving work for mcsm_na

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This commit is contained in:
Tanushree Tunstall 2021-02-15 12:22:19 +00:00
parent 322979406c
commit 7a74fecbda
4 changed files with 13 additions and 59 deletions
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15
mcsm_na/run_submit.py
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@ -8,7 +8,7 @@ Created on Fri Feb 12 12:15:26 2021
#%% load packages
import os
homedir = os.path.expanduser('~')
os.chdir (homedir + '/git/LSHTM_analysis/dynamut')
os.chdir (homedir + '/git/LSHTM_analysis/mcsm_na')
from submit_mcsm_na import *
########################################################################
# variables
@ -26,10 +26,15 @@ outdir = datadir + '/' + drug + '/output'
my_nuc_type = 'RNA'
my_pdb_file = indir + '/gid_complex.pdb'
# batch 1: 00.txt
my_mutation_list = outdir + '/snp_batches/20/snp_batch_00.txt'
my_suffix = 'gid_b1'
#RAN: 11 Feb, ~17:37
# batch 1: 00.txt: # RAN: 11 Feb, ~17:37, RETRIEVED: 15 Feb~ 12:18
#my_mutation_list = outdir + '/snp_batches/20/snp_batch_00.txt'
#my_suffix = 'gid_b1'
# batch 2: 01.txt
my_mutation_list = outdir + '/snp_batches/20/snp_batch_01.txt'
my_suffix = 'gid_b2'
# RAN: 15 Feb: 12:18
#==========================
# CALL: submit_mcsm_na()