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added active site positions to all config.R

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Tanushree Tunstall 2022-02-03 18:02:27 +00:00
parent 04cddbbf2b
commit 7a14655ecb
7 changed files with 78 additions and 24 deletions
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10
config/gid.R
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@ -3,7 +3,13 @@ drug = "streptomycin"
rna_bind_aa_pos = c(96, 97, 118, 163)
binding_aa_pos = c(48, 51, 137, 200)
active_aa_pos = sort(unique(c(rna_bind_aa_pos, binding_aa_pos)))
aa_plip = c(118, 220, 223)
aa_ligplus = c(118, 220, 223)
active_aa_pos = sort(unique(c(rna_bind_aa_pos
, binding_aa_pos
, aa_plip
, aa_ligplus)))
#rna_site = G518
cat("\nNo. of active site residues for gene"
@ -18,4 +24,4 @@ cat("\n==================================================="
, "\nRNA binding residues:"
, rna_bind_aa_pos
, "\nBinding site residues:"
, binding_aa_pos)
, binding_aa_pos)