uddated how to run plotting scripts. This is a cleaner version to keep up-to-date

scripts/plotting/running_plotting_scripts.txt

@@ -1,20 +1,14 @@
 #========
 # basic_barplots_PS.R: 
 #========
-Rscript basic_barplots_PS.R
-# Calls 'plotting_data.R' --> calls 'dirs.R'
- 'Plotting_data.R':
-#drug = opt$drug
-#gene = opt$gene
+./basic_barplots_PS.R -d streptomycin -g gid -f /home/tanu/gid_test_file.csv 
 
-# hardcoding when not using cmd
-drug = "streptomycin"
-gene = "gid"
+sources:
+ ## plotting_globals.R (previously dir.R)
+ ## plotting_data.R 
 
-#TODO
-making such that cmd line agrs are passed to basic_barplots_PS.R for gene, drug and maybe input file
-and then these call functions
 
+# TODO
 Delete: dirs.R
 after grepping
 barplots_subcolours_aa_combined.R:source("dirs.R")