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calculating af_or using function and cmd options now

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Tanushree Tunstall 2021-06-11 15:12:08 +01:00
parent 5f82c8b393
commit 6e8116bc16
5 changed files with 156 additions and 11 deletions
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scripts/running_scripts
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@ -34,9 +34,10 @@ In progress...
./rd_df.py -d <drug> -g <gene> # fixme: input tsv file is sourced manually from website!
#==============================
# af_or calcs: different types
# af_or_calcs.R: calculates af and or
# opt defaults, uses sensible defaults
#==============================
./af_or_calcs.R -d <drug> -g <gene># fixme: No conditional dir structure
./af_or_calcs.R -d <drug> -g <gene>
#==============================
# af_or calcs: kinship
@ -62,6 +63,9 @@ USE THE BELOW from within the or_kinship_link.py script or something?! as part o
# combining dfs: combining_dfs.py
#==============================
# FIXME: combining_FIXME.py
./combining_dfs.py --d <drug> -g <gene>
./combining_dfs.py -d <drug> -g <gene>
#==============================
mut_electrostatic_changes.py
#==============================
./mut_electrostatic_changes.py -d <drug> -g <gene>