tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

corrected subcols_axis name in sucols_all_PS

Browse source
This commit is contained in:
Tanushree Tunstall 2020-09-09 13:36:37 +01:00
parent f7b55d035a
commit 6d50b961a5
2 changed files with 1 additions and 88 deletions
Download patch file Download diff file Expand all files Collapse all files

2
scripts/plotting/barplots_subcolours_aa_PS.R
View file

@ -20,7 +20,7 @@ library(ggplot2)
library(data.table)
source("barplot_colour_function.R")
#source("subcols_axis.R")
source("subcols_axis_PS.R")
source("subcols_axis.R")
# should return the following dfs, directories and variables
# mut_pos_cols

87
scripts/plotting/columns_all_params.csv
View file

@ -1,87 +0,0 @@
,x,,changes,
1,mutationinformation,,Mutationinformation,
2,wild_type,,,consider...wild_aa
3,position,,Position,
4,mutant_type,,,consider...mutant_aa
5,chain,,,
6,ligand_id,,,
7,ligand_distance,,,
8,duet_stability_change,,,
9,duet_outcome,,DUET_outcome,
10,ligand_affinity_change,,,
11,ligand_outcome,,Lig_outcome,
12,duet_scaled,,ratioDUET,
13,affinity_scaled,,ratioPredAff,
14,wild_pos,,WildPos,
15,wild_chain_pos,,,
16,ddg,,,
17,contacts,,,
18,electro_rr,,,
19,electro_mm,,,
20,electro_sm,,,
21,electro_ss,,,
22,disulfide_rr,,,
23,disulfide_mm,,,
24,disulfide_sm,,,
25,disulfide_ss,,,
26,hbonds_rr,,,
27,hbonds_mm,,,
28,hbonds_sm,,,
29,hbonds_ss,,,
30,partcov_rr,,,
31,partcov_mm,,,
32,partcov_sm,,,
33,partcov_ss,,,
34,vdwclashes_rr,,,
35,vdwclashes_mm,,,
36,vdwclashes_sm,,,
37,vdwclashes_ss,,,
38,volumetric_rr,,,
39,volumetric_mm,,,
40,volumetric_sm,,,
41,volumetric_ss,,,
42,wild_type_dssp,,,
43,asa,,,
44,rsa,,,
45,ss,,,
46,ss_class,,,
47,chain_id,,,
48,wild_type_kd,,,
49,kd_values,,,
50,rd_values,,,
51,wt_3letter_caps,,,
52,mutation,,,
53,af,,,
54,beta_logistic,,,
55,or_logistic,,,
56,pval_logistic,,,
57,se_logistic,,,
58,zval_logistic,,,
59,ci_low_logistic,,,
60,ci_hi_logistic,,,
61,or_mychisq,,,
62,or_fisher,,,
63,pval_fisher,,,
64,ci_low_fisher,,,
65,ci_hi_fisher,,,
66,est_chisq,,,
67,pval_chisq,,,
68,chromosome_number,,,
69,ref_allele,,,
70,alt_allele,,,
71,mut_type,,,
72,gene_id,,,
73,gene_number,,,
74,mut_region,,,
75,mut_info,,,
76,chr_num_allele,,,
77,wt_3let,,,
78,mt_3let,,,
79,af_kin,,,
80,or_kin,,,
81,pwald_kin,,,
82,beta_kin,,,
83,se_kin,,,
84,logl_h1_kin,,,
85,l_remle_kin,,,
86,n_miss,,,
1 x changes
2 1 mutationinformation Mutationinformation
3 2 wild_type consider...wild_aa
4 3 position Position
5 4 mutant_type consider...mutant_aa
6 5 chain
7 6 ligand_id
8 7 ligand_distance
9 8 duet_stability_change
10 9 duet_outcome DUET_outcome
11 10 ligand_affinity_change
12 11 ligand_outcome Lig_outcome
13 12 duet_scaled ratioDUET
14 13 affinity_scaled ratioPredAff
15 14 wild_pos WildPos
16 15 wild_chain_pos
17 16 ddg
18 17 contacts
19 18 electro_rr
20 19 electro_mm
21 20 electro_sm
22 21 electro_ss
23 22 disulfide_rr
24 23 disulfide_mm
25 24 disulfide_sm
26 25 disulfide_ss
27 26 hbonds_rr
28 27 hbonds_mm
29 28 hbonds_sm
30 29 hbonds_ss
31 30 partcov_rr
32 31 partcov_mm
33 32 partcov_sm
34 33 partcov_ss
35 34 vdwclashes_rr
36 35 vdwclashes_mm
37 36 vdwclashes_sm
38 37 vdwclashes_ss
39 38 volumetric_rr
40 39 volumetric_mm
41 40 volumetric_sm
42 41 volumetric_ss
43 42 wild_type_dssp
44 43 asa
45 44 rsa
46 45 ss
47 46 ss_class
48 47 chain_id
49 48 wild_type_kd
50 49 kd_values
51 50 rd_values
52 51 wt_3letter_caps
53 52 mutation
54 53 af
55 54 beta_logistic
56 55 or_logistic
57 56 pval_logistic
58 57 se_logistic
59 58 zval_logistic
60 59 ci_low_logistic
61 60 ci_hi_logistic
62 61 or_mychisq
63 62 or_fisher
64 63 pval_fisher
65 64 ci_low_fisher
66 65 ci_hi_fisher
67 66 est_chisq
68 67 pval_chisq
69 68 chromosome_number
70 69 ref_allele
71 70 alt_allele
72 71 mut_type
73 72 gene_id
74 73 gene_number
75 74 mut_region
76 75 mut_info
77 76 chr_num_allele
78 77 wt_3let
79 78 mt_3let
80 79 af_kin
81 80 or_kin
82 81 pwald_kin
83 82 beta_kin
84 83 se_kin
85 84 logl_h1_kin
86 85 l_remle_kin
87 86 n_miss