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refactoring or_kin script minor changes only

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This commit is contained in:
Tanushree Tunstall 2020-07-10 12:37:41 +01:00
parent 4fd3462fc8
commit 6cedc3c14d
4 changed files with 10 additions and 15 deletions
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7
scripts/rd_df.py
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@ -51,7 +51,7 @@ drug = args.drug
gene = args.gene
gene_match = gene + '_p.'
data_dir = args.datadir
datadir = args.datadir
indir = args.input_dir
outdir = args.output_dir
@ -62,9 +62,7 @@ DEBUG = args.debug
#============
# directories
#============
if data_dir:
datadir = data_dir
else:
if not datadir:
datadir = homedir + '/' + 'git/Data'
if not indir:
@ -79,7 +77,6 @@ if not outdir:
if rd_filename:
in_filename_rd = rd_filename
else:
#in_filename_rd = '3pl1_rd.tsv'
in_filename_rd = gene.lower() + '_rd.tsv'
infile_rd = outdir + '/' + in_filename_rd