From 6cbef0c3d78611ec9e7b4c81cd38b7da7be9cc67 Mon Sep 17 00:00:00 2001 From: Tanushree Tunstall Date: Tue, 28 Jan 2020 11:53:10 +0000 Subject: [PATCH] tidy script for data extraction --- meta_data_analysis/pnca_data_extraction.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/meta_data_analysis/pnca_data_extraction.py b/meta_data_analysis/pnca_data_extraction.py index 2a030f9..454fb5f 100755 --- a/meta_data_analysis/pnca_data_extraction.py +++ b/meta_data_analysis/pnca_data_extraction.py @@ -308,7 +308,7 @@ else: # count if all the mutations are indeed in the protein coding region # i.e begin with pnca_p -meta_pnca_LF1['mutation'].str.count('pncA_p.').sum() # 3093 +meta_pnca_LF1['mutation'].str.count('pncA_p.').sum() # should be true. # and check against the length of the df, which should match