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Tanushree Tunstall 2022-03-02 11:44:04 +00:00
parent 2274f01f23
commit 6c6709e41e
6 changed files with 198 additions and 29 deletions
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63
scripts/functions/tests/data_for_testingF.R Normal file
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############################################################################
# merged_df3 = read.csv("~/git/Data/cycloserine/output/alr_all_params.csv"); source("~/git/LSHTM_analysis/config/alr.R")
# if ( tolower(gene) == "alr") {
# aa_pos_lig1 = NULL
# aa_pos_lig2 = NULL
# aa_pos_lig3 = NULL
# p_title = gene
# }
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
###########################################################################
# merged_df3 = read.csv("~/git/Data/ethambutol/output/embb_all_params.csv"); source("~/git/LSHTM_analysis/config/embb.R")
# if ( tolower(gene) == "embb") {
# aa_pos_lig1 = aa_pos_ca
# aa_pos_lig2 = aa_pos_cdl
# aa_pos_lig3 = aa_pos_dsl
# p_title = gene
# }
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
###########################################################################
merged_df3 = read.csv("~/git/Data/streptomycin/output/gid_all_params.csv")
source("~/git/LSHTM_analysis/config/gid.R")
if ( tolower(gene) == "gid") {
aa_pos_lig1 = aa_pos_rna
aa_pos_lig2 = aa_pos_sam
aa_pos_lig3 = aa_pos_amp
p_title = gene
}
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
###########################################################################
# merged_df3 = read.csv("~/git/Data/isoniazid/output/katg_all_params.csv"); source("~/git/LSHTM_analysis/config/katg.R")
# if ( tolower(gene) == "katg") {
# aa_pos_lig1 = aa_pos_hem
# aa_pos_lig2 = NULL
# aa_pos_lig3 = NULL
# p_title = gene
# }
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
###########################################################################
# merged_df3 = read.csv("~/git/Data/pyrazinamide/output/pnca_all_params.csv"); source("~/git/LSHTM_analysis/config/pnca.R")
# if ( tolower(gene) == "pnca") {
# aa_pos_lig1 = aa_pos_fe
# aa_pos_lig2 = NULL
# aa_pos_lig3 = NULL
# p_title = gene
# }
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
###########################################################################
merged_df3 = read.csv("~/git/Data/rifampicin/output/rpob_all_params.csv"); source("~/git/LSHTM_analysis/config/rpob.R")
if ( tolower(gene) == "rpob") {
aa_pos_lig1 = NULL
aa_pos_lig2 = NULL
aa_pos_lig3 = NULL
p_title = gene
}
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#########################################################################