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more updates to pairs_panels to take colnames for plotting

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Tanushree Tunstall 2021-09-14 18:20:12 +01:00
parent 036cc14e40
commit 6beb003de5
1 changed files with 12 additions and 4 deletions
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16
scripts/functions/my_pairs_panel.R
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@ -1,17 +1,17 @@
my_corr_pairs <- function (corr_data_all my_corr_pairs <- function (corr_data_all
, corr_data_range = 1:length(corr_data_all) , corr_cols = colnames(corr_data_all)
, corr_method = "spearman" # other options: "pearson" or "kendall" , corr_method = "spearman" # other options: "pearson" or "kendall"
, colour_categ_col = "mutation_info_labels" , colour_categ_col = "mutation_info_labels"
, categ_colour = c("#E69F00", "#999999") , categ_colour = c("#E69F00", "#999999")
, density_show = F , density_show = F
, hist_col = "coral4" , hist_col = "coral4"
, dot_size = 1.6 , dot_size = 1.6
, ats = 1 , ats = 1.5
, corr_lab_size = 1 , corr_lab_size = 3
, corr_value_size = 1) , corr_value_size = 1)
{ {
corr_data_df = corr_data_all[corr_data_range] corr_data_df = corr_data_all[corr_cols]
my_bg = categ_colour[corr_data_all[[colour_categ_col]] ] my_bg = categ_colour[corr_data_all[[colour_categ_col]] ]
OutPlot_corr = pairs.panels(corr_data_df OutPlot_corr = pairs.panels(corr_data_df
@ -38,6 +38,14 @@ my_corr_pairs <- function (corr_data_all
} }
c_plot <- my_corr_pairs(corrplot_df
, dot_size = 1.6
, ats = 1.5
, corr_lab_size = 1.5
, corr_value_size = 1)
###################################################################### ######################################################################
my_pp = function (x, smooth = TRUE, scale = FALSE, density = TRUE, ellipses = TRUE, my_pp = function (x, smooth = TRUE, scale = FALSE, density = TRUE, ellipses = TRUE,
digits = 2, method = "pearson", pch = 20, lm = FALSE, cor = TRUE, digits = 2, method = "pearson", pch = 20, lm = FALSE, cor = TRUE,