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added logoP_logolas.R to plot logolas like plot to show ED regions

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Tanushree Tunstall 2022-01-24 17:23:32 +00:00
parent 9aa62b33b1
commit 6a9f4a0cab
4 changed files with 418 additions and 32 deletions
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scripts/plotting/logo_data_msa.R
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@ -39,7 +39,7 @@ head(msa_seq)
#================
#in_filename_fasta = paste0(tolower(gene), ".1fasta")
in_filename_fasta = paste0(tolower(gene), "2_f2.fasta") # gid
in_filename_fasta = paste0(tolower(gene), "2_f2.fasta")
infile_fasta = paste0(indir, "/", in_filename_fasta)
cat("\nInput fasta file for WT: ", infile_fasta, "\n")