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indicated hardcoded active site residues for pnca

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Tanushree Tunstall 2020-10-06 19:12:32 +01:00
parent be50636b15
commit 69f3629cc0
1 changed files with 1 additions and 0 deletions
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scripts/data_selective_pressure.R
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@ -38,6 +38,7 @@ dnds_df_all = merged_df2[, cols_to_select]
str(dnds_df_all) str(dnds_df_all)
is.numeric(dnds_df_all$position) is.numeric(dnds_df_all$position)
# !!!!BEWARE HARDCODED value for <gene> !!!
active_site_positions = c(8, 13, 49, 51, 57, 68, 71, 96, 103, 133, 134, 137, 138) active_site_positions = c(8, 13, 49, 51, 57, 68, 71, 96, 103, 133, 134, 137, 138)
aa_site_i = which(dnds_df_all$position%in%active_site_positions) aa_site_i = which(dnds_df_all$position%in%active_site_positions)