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Tanushree Tunstall 2022-08-14 12:35:33 +01:00
parent 939528024a
commit 65d697d3a2
1 changed files with 14 additions and 7 deletions
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scripts/plotting/plotting_thesis/basic_barplots.R
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@ -1,4 +1,4 @@
#!/usr/bin/env Rscript #!/usr/bin/env Rscript
######################################################### #########################################################
# TASK: Barplots for mCSM DUET, ligand affinity, and foldX # TASK: Barplots for mCSM DUET, ligand affinity, and foldX
# basic barplots with count of mutations # basic barplots with count of mutations
@ -22,19 +22,26 @@
# , leg_position = "top" # , leg_position = "top"
# , bar_fill_values = c("#F8766D", "#00BFC4") # , bar_fill_values = c("#F8766D", "#00BFC4")
######################################################### #########################################################
#=============
# Data: Input
#==============
#source("~/git/LSHTM_analysis/config/alr.R")
source("~/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/config/katg.R")
#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
source("~/git/LSHTM_analysis/scripts/plotting/plotting_colnames.R")
#=======================================================================
#======= #=======
# output # output
#======= #=======
outdir_images = paste0("~/git/Writing/thesis/images/results/" outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
, tolower(gene), "/")
cat("plots will output to:", outdir_images) cat("plots will output to:", outdir_images)
########################################################### ###########################################################
# get from preformatting.R
#df3
# ConSurf labels # ConSurf labels