tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

saving work

Browse source
This commit is contained in:
Tanushree Tunstall 2022-08-14 12:35:33 +01:00
parent 939528024a
commit 65d697d3a2
1 changed files with 14 additions and 7 deletions
Download patch file Download diff file Expand all files Collapse all files

21
scripts/plotting/plotting_thesis/basic_barplots.R
View file

@ -1,4 +1,4 @@
#!/usr/bin/env Rscript
#!/usr/bin/env Rscript
#########################################################
# TASK: Barplots for mCSM DUET, ligand affinity, and foldX
# basic barplots with count of mutations
@ -22,19 +22,26 @@
# , leg_position = "top"
# , bar_fill_values = c("#F8766D", "#00BFC4")
#########################################################
#=============
# Data: Input
#==============
#source("~/git/LSHTM_analysis/config/alr.R")
source("~/git/LSHTM_analysis/config/embb.R")
#source("~/git/LSHTM_analysis/config/katg.R")
#source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
source("~/git/LSHTM_analysis/scripts/plotting/plotting_colnames.R")
#=======================================================================
#=======
# output
#=======
outdir_images = paste0("~/git/Writing/thesis/images/results/"
, tolower(gene), "/")
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
cat("plots will output to:", outdir_images)
###########################################################
# get from preformatting.R
#df3
# ConSurf labels