added dynamut dir

dynamut/dynamut.py

@@ -0,0 +1,46 @@
+#!/usr/bin/env python3
+# -*- coding: utf-8 -*-
+"""
+Created on Wed Aug 19 14:33:51 2020
+
+@author: tanu
+"""
+
+
+#%% load packages
+import os,sys
+import subprocess
+import argparse
+import requests
+import re
+import time
+from bs4 import BeautifulSoup
+import pandas as pd
+from pandas.api.types import is_string_dtype
+from pandas.api.types import is_numeric_dtype
+#%%============================================================================
+
+#1) define muts batch
+#take mcsm file
+#split into 'n' batches
+#write output file with suffix of batch number
+
+
+#********** done this par ****************
+#2) get results for a batch url
+# read  file
+# store batch url
+#extract  number
+#build single url
+#build single results urls
+#get results and store them in df
+#update df 
+#dim of df = no. of muts in batch
+
+#3) format results
+# store unit measurements separtely
+# omit unit measurements from cols
+# create extra columns '_outcome' suffix by splitting numerical output
+# create separate col for  mcsm as it doesn't have output text
+      
+#%%============================================================================