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renamed files with shorter names and corrected paths for input and output files

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This commit is contained in:
Tanushree Tunstall 2020-01-13 10:39:49 +00:00
parent 4be0de97d7
commit 61fcd14b17
8 changed files with 244 additions and 164 deletions
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11
mcsm_analysis/pyrazinamide/scripts/mcsm/run.sh
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@ -1,6 +1,9 @@
# run step0-step3a for mcsm pipeline
#!/bin/bash
# run all bash scripts for mcsm
#./step0_check_duplicate_SNPs.sh
#./step1_mCSMLig_curl_submit_store_outputurl.sh
./step2_mCSM_LIG_batch_outputurls_results.sh
./step3a_mCSM_LIG_regex_output_formatting.sh
#./step1_lig_output_urls.sh
./step2_lig_results.sh
./step3a_results_format_interim.sh