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minor tidy and leble adjust sizes for simple barplots

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Tanushree Tunstall 2022-08-04 10:26:18 +01:00
parent bcba0c359e
commit 61c7a30835
3 changed files with 12 additions and 6 deletions
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3
scripts/Header_TT.R
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@ -223,7 +223,8 @@ consurf_palette2 = c("0" = "yellow2"
, "9" = "darkorchid4") , "9" = "darkorchid4")
consurf_colours = c("0" = rgb(1.00,1.00,0.59) consurf_colours = c(#"0" = rgb(1.00,1.00,0.59)
"nsd" = rgb(1.00,1.00,0.59)
, "1" = rgb(0.63,0.16,0.37) , "1" = rgb(0.63,0.16,0.37)
, "2" = rgb(0.94,0.49,0.67) , "2" = rgb(0.94,0.49,0.67)
, "3" = rgb(0.98,0.78,0.86) , "3" = rgb(0.98,0.78,0.86)

2
scripts/functions/position_count_bp.R
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@ -95,7 +95,7 @@ site_snp_count_bp <- function (plotdf
# FIXME: should really be legend title # FIXME: should really be legend title
# but atm being using as plot title # but atm being using as plot title
#my_leg_title #my_leg_title
bp_plot_title = paste0("Total nsSNPs: ", tot_muts bp_plot_title = paste0("Total SNPs: ", tot_muts
, "\nTotal sites: ", tot_sites) , "\nTotal sites: ", tot_sites)
#------------- #-------------

9
scripts/functions/stability_count_bp.R
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@ -24,15 +24,19 @@ stability_count_bp <- function(plotdf
, geom_ls = 10 # geom_label size , geom_ls = 10 # geom_label size
, yaxis_title = "Number of nsSNPs" , yaxis_title = "Number of nsSNPs"
, bp_plot_title = "" , bp_plot_title = ""
, label_categories = c("Destabilising", "Stabilising") , label_categories = c("LEVEL1", "LEVEL2")
, title_colour = "chocolate4" , title_colour = "chocolate4"
, subtitle_text = NULL , subtitle_text = NULL
, sts = 20 , sts = 20
, subtitle_colour = "pink" , subtitle_colour = "#350E20FF" #brown
#, leg_position = c(0.73,0.8) # within plot area #, leg_position = c(0.73,0.8) # within plot area
, leg_position = "top" , leg_position = "top"
, bar_fill_values = c("#F8766D", "#00BFC4")){ , bar_fill_values = c("#F8766D", "#00BFC4")){
# convert to factor and get labels
plotdf[[df_colname]] = as.factor(plotdf[[df_colname]])
label_categories = levels(plotdf[[df_colname]])
#OutPlot_count = ggplot(plotdf, aes(x = eval(parse(text = df_colname)))) + #OutPlot_count = ggplot(plotdf, aes(x = eval(parse(text = df_colname)))) +
OutPlot_count = ggplot(plotdf, aes_string(x = df_colname)) + OutPlot_count = ggplot(plotdf, aes_string(x = df_colname)) +
geom_bar(aes(fill = eval(parse(text = df_colname))), show.legend = TRUE) + geom_bar(aes(fill = eval(parse(text = df_colname))), show.legend = TRUE) +
@ -57,6 +61,7 @@ stability_count_bp <- function(plotdf
labs(title = bp_plot_title labs(title = bp_plot_title
, subtitle = subtitle_text , subtitle = subtitle_text
, y = yaxis_title) + , y = yaxis_title) +
scale_fill_discrete(name = leg_title scale_fill_discrete(name = leg_title
, labels = label_categories) + , labels = label_categories) +