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saving work for the day

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This commit is contained in:
Tanushree Tunstall 2021-09-02 17:40:24 +01:00
parent a981580b7a
commit 605eb54526
3 changed files with 14 additions and 7 deletions
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4
dynamut/split_csv.sh
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@ -1,6 +1,6 @@
#!/bin/bash
# FIXME: This is written for expediency to kickstart running dynamut and mcsm-NA
# FIXME: This is written for expediency to kickstart running dynamut, mcsm-PPI2 (batch pf 50) and mCSM-NA (batch of 20)
# Usage: ~/git/LSHTM_analysis/dynamut/split_csv.sh <input file> <output dir> <chunk size in lines>
# copy your snp file to split into the dynamut dir
@ -13,7 +13,9 @@ mkdir -p ${OUTDIR}/${CHUNK}
cd ${OUTDIR}/${CHUNK}
split ../../${INFILE} -l ${CHUNK} -d snp_batch_
#split ${INFILE} -l ${CHUNK} -d snp_batch_
# use case
#~/git/LSHTM_analysis/dynamut/split_csv.sh gid_mcsm_formatted_snps.csv snp_batches 50
#~/git/LSHTM_analysis/dynamut/split_csv.sh embb_mcsm_formatted_snps.csv snp_batches 50
~/git/LSHTM_analysis/dynamut/split_csv.sh pnca_mcsm_formatted_snps.csv snp_batches 50