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refactored dm om plots and generated the final layout

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This commit is contained in:
Tanushree Tunstall 2022-08-08 16:45:55 +01:00
parent 28510471f0
commit 5bdfd03443
5 changed files with 169 additions and 85 deletions
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11
scripts/plotting/plotting_thesis/preformatting.R
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@ -8,6 +8,11 @@ source("~/git/LSHTM_analysis/config/embb.R")
# get plottting dfs
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
#=======
# output
#=======
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
###################################################################
# FIXME: ADD distance to NA when SP replies
# DONE: plotting_globals.R
@ -86,12 +91,6 @@ all_cols = c(common_cols
, scaled_cols_conservation
, outcome_cols_conservation)
#=======
# output
#=======
outdir_images = paste0("~/git/Writing/thesis/images/results/", tolower(gene), "/")
####################################
# merged_df3: NECESSARY pre-processing
###################################