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added function to get wf and lf data and corresponding test

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Tanushree Tunstall 2022-01-31 17:36:34 +00:00
parent a287b801f7
commit 5779b3fe87
2 changed files with 763 additions and 0 deletions
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53
scripts/functions/tests/test_dm_om_data.R Normal file
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#!/usr/bin/env Rscript
#source("~/git/LSHTM_analysis/config/alr.R")
#source("~/git/LSHTM_analysis/config/embb.R")
source("~/git/LSHTM_analysis/config/gid.R")
#source("~/git/LSHTM_analysis/config/katg.R")
#source("~/git/LSHTM_analysis/config/pnca.R")
#source("~/git/LSHTM_analysis/config/rpob.R")
source("~/git/LSHTM_analysis/scripts/plotting/get_plotting_dfs.R")
all_dm_om_df = dm_om_wf_lf_data(df = merged_df3, gene_name = gene)
wf_duet = all_dm_om_df[['wf_duet']]
lf_duet = all_dm_om_df[['lf_duet']]
wf_mcsm_lig = all_dm_om_df[['wf_mcsm_lig']]
lf_mcsm_lig = all_dm_om_df[['lf_mcsm_lig']]
wf_foldx = all_dm_om_df[['wf_foldx']]
lf_foldx = all_dm_om_df[['lf_foldx']]
wf_deepddg = all_dm_om_df[['wf_deepddg']]
lf_deepddg = all_dm_om_df[['lf_deepddg']]
wf_dynamut2 = all_dm_om_df[['wf_dynamut2']]
lf_dynamut2 = all_dm_om_df[['lf_dynamut2']]
wf_consurf = all_dm_om_df[['wf_consurf']]
lf_consurf = all_dm_om_df[['lf_consurf']]
wf_snap2 = all_dm_om_df[['wf_snap2']]
lf_snap2 = all_dm_om_df[['lf_snap2']]
wf_mcsm_na = all_dm_om_df[['wf_mcsm_na']]
lf_mcsm_na = all_dm_om_df[['lf_mcsm_na']]
wf_mcsm_ppi2 = all_dm_om_df[['wf_mcsm_ppi2']]
lf_mcsm_ppi2 = all_dm_om_df[['lf_mcsm_ppi2']]
wf_dynamut = all_dm_om_df[['wf_dynamut']]
lf_dynamut = all_dm_om_df[['lf_dynamut']]
wf_encomddg = all_dm_om_df[['wf_encomddg']]
lf_encomddg = all_dm_om_df[['lf_encomddg']]
wf_encomdds = all_dm_om_df[['wf_encomdds']]
lf_encomdds = all_dm_om_df[['lf_encomdds']]
wf_sdm = all_dm_om_df[['wf_sdm']]
lf_sdm = all_dm_om_df[['lf_sdm']]
wf_mcsm = all_dm_om_df[['wf_mcsm']]
lf_mcsm = all_dm_om_df[['lf_mcsm']]