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agenerated corr plots with MAF and provean

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This commit is contained in:
Tanushree Tunstall 2022-08-06 13:08:42 +01:00
parent 1a513913ce
commit 569e372476
6 changed files with 115 additions and 104 deletions
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6
scripts/plotting/plotting_thesis/preformatting.R
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@ -111,7 +111,9 @@ df3 = merged_df3
#df3[[consurf_colNew]] = as.factor(df3[[consurf_colNew]])
#df3[[consurf_colNew]]
# not this bit
levels(df3$consurf_outcome) = c( "nsd", 1, 2, 3, 4, 5, 6, 7, 8, 9)
#!!!!!!!!!!!!!1
#levels(df3$consurf_outcome) = c( "nsd", 1, 2, 3, 4, 5, 6, 7, 8, 9)
#levels(df3$consurf_outcome)
# SNAP2 labels
@ -242,9 +244,9 @@ corr_ppi2_colnames = c("mCSM-PPI2"
, "dst_mode"
, drug)
#FIXME: Add provean
corr_conservation_cols = c("Consurf"
, "SNAP2"
, "PROVEAN"
, "MAF"
, "Log (OR)"
, "-Log (P)"