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bug fixes and massive clean up of data extraction script

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This commit is contained in:
Tanushree Tunstall 2020-03-23 13:33:25 +00:00
parent a5356cf88b
commit 53d19d5dd8
3 changed files with 818 additions and 454 deletions
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7
mcsm_analysis/pyrazinamide/scripts/plotting/logolas_logoplot.R
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@ -68,10 +68,6 @@ table(my_df$position == my_df$Position)
c1 = unique(my_df$Position) # 130
nrow(my_df) # 3092
#FIXME
#!!! RESOLVE !!!
# get freq count of positions and add to the df
@ -99,9 +95,6 @@ my_data_snp = my_df[my_df$occurrence!=1,] #3072, 36...3019
u = unique(my_data_snp$Position) #96
########################################################################
# end of data extraction and cleaning for plots #
########################################################################