From 4f50786c6fd6a854c00e1a82eea4da65807d4fb4 Mon Sep 17 00:00:00 2001
From: Tanushree Tunstall <tanu@tunstall.in>
Date: Sat, 28 Mar 2020 17:56:39 +0000
Subject: [PATCH] added R header file to base dir to allow general access by R
 scripts

---
 my_header.R | 135 ++++++++++++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 135 insertions(+)
 create mode 100644 my_header.R

diff --git a/my_header.R b/my_header.R
new file mode 100644
index 0000000..5009f29
--- /dev/null
+++ b/my_header.R
@@ -0,0 +1,135 @@
+#########################################################
+### A) Installing and loading required packages
+#########################################################
+#lib_loc = "/usr/local/lib/R/site-library")
+
+#if (!require("gplots")) {
+#  install.packages("gplots", dependencies = TRUE)
+#  library(gplots)
+#}
+
+#if (!require("tidyverse")) {
+#  install.packages("tidyverse", dependencies = TRUE)
+#  library(tidyverse)
+#}
+
+if (!require("ggplot2")) {
+  install.packages("ggplot2", dependencies = TRUE)
+  library(ggplot2)
+}
+
+if (!require("ggridges")) {
+  install.packages("ggridges", dependencies = TRUE)
+  library(ggridges)
+}
+
+if (!require("plotly")) {
+  install.packages("plotly", dependencies = TRUE)
+  library(plotly)
+}
+
+if (!require("cowplot")) {
+  install.packages("copwplot", dependencies = TRUE)
+  library(cowplot)
+}
+
+if (!require("ggcorrplot")) {
+  install.packages("ggcorrplot", dependencies = TRUE)
+  library(ggcorrplot)
+}
+
+if (!require("ggpubr")) {
+  install.packages("ggpubr", dependencies = TRUE)
+  library(ggpubr)
+}
+
+if (!require("RColorBrewer")) {
+  install.packages("RColorBrewer", dependencies = TRUE)
+  library(RColorBrewer)
+}
+
+if (!require ("GOplot")) {
+  install.packages("GOplot")
+  library(GOplot)
+}
+
+if(!require("VennDiagram")) {
+  install.packages("VennDiagram", dependencies = T)
+  library(VennDiagram)
+}
+
+if(!require("scales")) {
+  install.packages("scales", dependencies = T)
+  library(scales)
+}
+
+if(!require("plotrix")) {
+  install.packages("plotrix", dependencies = T)
+  library(plotrix)
+}
+
+if(!require("stats")) {
+  install.packages("stats", dependencies = T)
+  library(stats)
+}
+
+if(!require("stats4")) {
+  install.packages("stats4", dependencies = T)
+  library(stats4)
+}
+
+if(!require("data.table")) {
+install.packages("data.table")
+  library(data.table)
+}
+
+if (!require("PerformanceAnalytics")){
+  install.packages("PerformanceAnalytics", dependencies = T)
+  library(PerformaceAnalytics)
+}
+
+if (!require ("GGally")){
+  install.packages("GGally")
+  library(GGally)
+}
+
+if (!require ("corrr")){
+  install.packages("corrr")
+  library(corrr)
+}
+
+if (!require ("psych")){
+  install.packages("psych")
+  library(psych)
+}
+
+if (!require ("dplyr")){
+  install.packages("dplyr")
+  library(dplyr)
+}
+
+if (!require ("compare")){
+  install.packages("compare")
+  library(compare)
+}
+
+if (!require ("arsenal")){
+  install.packages("arsenal")
+  library(arsenal)
+}
+
+
+####TIDYVERSE
+# Install
+#if(!require(devtools)) install.packages("devtools")
+#devtools::install_github("kassambara/ggcorrplot")
+
+#library(ggcorrplot)
+
+
+###for PDB files
+#install.packages("bio3d") 
+if(!require(bio3d)){
+  install.packages("bio3d")
+  library(bio3d)
+}