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saving work after running combining_dfs.py

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Tanushree Tunstall 2021-11-12 14:16:48 +00:00
parent dad8f526a2
commit 4eaa0b5d2b
7 changed files with 136 additions and 92 deletions
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5
mcsm_ppi2/format_results_mcsm_ppi2.py
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@ -22,12 +22,11 @@ from pandas.api.types import is_numeric_dtype
sys.path.append(homedir + '/git/LSHTM_analysis/scripts')
from reference_dict import up_3letter_aa_dict
from reference_dict import oneletter_aa_dict
#%%#####################################################################
#%%============================================================================
def format_mcsm_ppi2_output(mcsm_ppi2_output_csv):
"""
@param mcsm_ppi2_output_csv: file containing mcsm_ppi2_results for all muts
@param mcsm_ppi2_output_csv: file containing mcsm_ppi2_results for all mcsm snps
which is the result of combining all mcsm_ppi2 batch results, and using
bash scripts to combine all the batch results into one file.
Formatting df to a pandas df and output as csv.