saving work for yesterday where uq runs were repeated

scripts/ml/running_ml_scripts.txt

@@ -1,49 +1,51 @@
 ==================================
-# BTS data: UQ
-# Features NOT including AA index
-# Date: 30/05/2022, but reran with active_site indication column that was added lateron
-# TODO: put in folder called v1, and UQ in folder called UQ_v0 (will need to rename!)
+# UQ run: same as ORIGINAL except
+# Features NOT including AA index, but includes active site annotations 
+# Date: 30/05/2022, but reran with from my desktop on 19/05/2022 to capture log and include active_site indication column
+# captures error: 2>$1
 =================================
-./pnca_config.py
-./embb_config.py 
-./gid_config.py
-./katg_config.py
-./rpob_config.py
+./pnca_config.py 2>&1 | tee log_pnca_config.txt
+./embb_config.py 2>&1 | tee log_embb_config.txt
+./gid_config.py 2>&1 | tee log_gid_config.txt
+./katg_config.py 2>&1 | tee log_katg_config.txt
+./rpob_config.py 2>&1 | tee log_rpob_config.txt
+./alr_config.py 2>&1 | tee log_alr_config.txt 
+
+# ERROR, as expected, too few values!
 
-## ./alr_config.py = NA
-# ^^^^^^^^ FIXME!
 ########################################################################
 
-==================================
-# BTS data: imputed values
-# All features including AA index
-# Date: 16/05/2022
 =================================
+# Split: ORIGINAL
+# actual values: training set
+# imputed values: blind set
+# All features including AA index
+# Date: 18/05/2022 # reran with minor formatting and log capture
+# captures error: 2>$1
+=================================
+./pnca_orig.py 2>&1 | tee log_pnca_orig.txt
+./embb_orig.py 2>&1 | tee log_embb_orig.txt
+./gid_orig.py 2>&1 | tee log_gid_orig.txt
+./katg_orig.py 2>&1 | tee log_katg_orig.txt
+./rpob_orig.py 2>&1 | tee log_rpob_orig.txt
+./alr_orig.py 2>&1 | tee log_alr_orig.txt # ERROR, as expected, too few values!
 
-./pnca_config.py
-./embb_config.py 
-./gid_config.py
-./katg_config.py
-./rpob_config.py
-
-##./alr_config.py = NA
 ########################################################################
 
 =================================
 # Split: 70/30
 # All features including AA index
-# Date: 17/05/2022 and 18/05/2022
+# Date: 17/05/2022 and 18/05/2022, reran with minor foramtting and log capture
 # captures error: 2>$1
 =================================
-
-./pnca_7030.py
-./embb_7030.py 
-# ./gid_7030.py: problems, CT values are non existing except for rouC
+./pnca_7030.py 2>&1 | tee log_pnca_7030.txt
+./embb_7030.py 2>&1 | tee log_embb_7030.txt
 ./gid_7030.py 2>&1 | tee log_gid_7030.txt
-./katg_7030.py
-./rpob_7030.py
+./katg_7030.py 2>&1 | tee log_katg_7030.txt
+./rpob_7030.py 2>&1 | tee log_rpob_7030.txt
+./alr_7030.py 2>&1 | tee log_alr_7030.txt # ERROR, as expected, too few values!
 
-##./alr_7030.py = NA
+problems, CT values are non existing except for rouC
 ########################################################################
 
 =================================
@@ -57,7 +59,7 @@
 ./gid_8020.py 2>&1 | tee log_gid_8020.txt
 ./katg_8020.py 2>&1 | tee log_katg_8020.txt
 ./rpob_8020.py 2>&1 | tee log_rpob_8020.txt
-./alr_8020.py 2>&1 | tee log_alr_8020.txt
+./alr_8020.py 2>&1 | tee log_alr_8020.txt # ERROR, as expected, too few values!
 
 ########################################################################
 
@@ -72,11 +74,11 @@
 ./gid_sl.py 2>&1 | tee log_gid_sl.txt
 ./katg_sl.py 2>&1 | tee log_katg_sl.txt
 ./rpob_sl.py 2>&1 | tee log_rpob_sl.txt
-./alr_sl.py 2>&1 | tee log_alr_sl.txt
+./alr_sl.py 2>&1 | tee log_alr_sl.txt # ERROR, as expected, too few values!
 
 ########################################################################
 =================================
-# Split: Reverse training
+# Split: REVERSE training
 # imputed values: training set
 # actual values: blind set
 # All features including AA index
@@ -88,7 +90,7 @@
 ./gid_rt.py 2>&1 | tee log_gid_rt.txt
 ./katg_rt.py 2>&1 | tee log_katg_rt.txt
 ./rpob_rt.py 2>&1 | tee log_rpob_rt.txt
-./alr_rt.py 2>&1 | tee log_alr_rt.txt
+./alr_rt.py 2>&1 | tee log_alr_rt.txt # ERROR, as expected, too few values!
 
 ########################################################################
 # COMPLETE Data: actual + na i.e imputed
@@ -105,7 +107,7 @@
 ./gid_cd_7030.py 2>&1 | tee log_gid_cd_7030.txt
 ./katg_cd_7030.py 2>&1 | tee log_katg_cd_7030.txt
 ./rpob_cd_7030.py 2>&1 | tee log_rpob_cd_7030.txt
-./alr_cd_7030.py 2>&1 | tee log_alr_cd_7030.txt
+./alr_cd_7030.py 2>&1 | tee log_alr_cd_7030.txt # ERROR, as expected, too few values!
 
 ########################################################################
 =================================
@@ -119,5 +121,18 @@
 ./gid_cd_8020.py 2>&1 | tee log_gid_cd_8020.txt
 ./katg_cd_8020.py 2>&1 | tee log_katg_cd_8020.txt
 ./rpob_cd_8020.py 2>&1 | tee log_rpob_cd_8020.txt
-./alr_cd_8020.py 2>&1 | tee log_alr_cd_8020.txt
+./alr_cd_8020.py 2>&1 | tee log_alr_cd_8020.txt # ERROR, as expected, too few values!
+
+=================================
+# Split: scaling law [COMPLETE DATA]
+# All features including AA index
+# Date: 18/05/2022
+# captures error: 2>$1
+=================================
+./pnca_cd_sl.py 2>&1 | tee log_pnca_cd_sl.txt
+./embb_cd_sl.py 2>&1 | tee log_embb_cd_sl.txt
+./gid_cd_sl.py 2>&1 | tee log_gid_cd_sl.txt
+./katg_cd_sl.py 2>&1 | tee log_katg_cd_sl.txt
+./rpob_cd_sl.py 2>&1 | tee log_rpob_cd_sl.txt
+./alr_cd_sl.py 2>&1 | tee log_alr_cd_sl.txt # ERROR, as expected, too few values!