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remove white space in colnames before mcsm format output

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Tanushree Tunstall 2020-07-14 12:59:40 +01:00
parent 83383b4493
commit 46b1505fdf
3 changed files with 9 additions and 0 deletions
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3
mcsm/ind_scripts/format_results.py
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@ -308,6 +308,9 @@ def format_mcsm_output(mcsm_outputcsv):
print('Sorting df by position')
mcsm_data_fs = mcsm_data_f.sort_values(by = ['position'])
print('sorted df:\n', mcsm_data_fs.head())
# Remove white space everywhere before output: bit me when merging!?
mcsm_data_fs.columns = mcsm_data_fs.columns.str.replace(' ', '')
#%%===========================================================================
#############
# sanity check before writing file