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added gene.lower to dynamut2 format result script

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Tanushree Tunstall 2021-10-19 11:12:34 +01:00
parent 9ed9e703d6
commit 4639688922
1 changed files with 3 additions and 3 deletions
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6
dynamut/run_format_results_dynamut.py
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@ -66,12 +66,12 @@ outdir_dynamut = outdir + '/dynamut_results/'
outdir_dynamut2 = outdir + '/dynamut_results/dynamut2/' outdir_dynamut2 = outdir + '/dynamut_results/dynamut2/'
# Input file # Input file
#infile_dynamut = outdir_dynamut + gene + '_dynamut_all_output_clean.csv' #infile_dynamut = outdir_dynamut + gene.lower() + '_dynamut_all_output_clean.csv'
infile_dynamut2 = outdir_dynamut2 + gene + '_dynamut2_output_combined_clean.csv' infile_dynamut2 = outdir_dynamut2 + gene.lower() + '_dynamut2_output_combined_clean.csv'
# Formatted output filename # Formatted output filename
#outfile_dynamut_f = outdir_dynamut2 + gene + '_dynamut_norm.csv' #outfile_dynamut_f = outdir_dynamut2 + gene + '_dynamut_norm.csv'
outfile_dynamut2_f = outdir_dynamut2 + gene + '_dynamut2_norm.csv' outfile_dynamut2_f = outdir_dynamut2 + gene.lower() + '_dynamut2_norm.csv'
#=============================== #===============================
# CALL: format_results_dynamut # CALL: format_results_dynamut