diff --git a/mcsm/format_results.py b/mcsm/format_results.py index a79879c..d0c8e52 100755 --- a/mcsm/format_results.py +++ b/mcsm/format_results.py @@ -86,7 +86,7 @@ mcsm_data.rename(columns = my_colnames_dict, inplace = True) mcsm_data.columns #%%=========================================================================== # populate mutationinformation column:mcsm style muts {WT}{MUT} -print('populating column : Mutationinformation which is currently empty\n', mcsm_data['Mutationinformation']) +print('Populating column : Mutationinformation which is currently empty\n', mcsm_data['Mutationinformation']) mcsm_data['Mutationinformation'] = mcsm_data['Wild_type'] + mcsm_data['Position'].astype(str) + mcsm_data['Mutant_type'] print('checking after populating:\n', mcsm_data['Mutationinformation'] , '\n===================================================================') @@ -114,7 +114,6 @@ else: #%%=========================================================================== # create DUET_outcome column: classification based on DUET stability values print('Assigning col: DUET_outcome based on DUET stability values') - print('Sanity check:') # count positive values in the DUET column c = mcsm_data[mcsm_data['DUET_change_kcalpermol']>=0].count() diff --git a/mcsm/run_mcsm.py b/mcsm/run_mcsm.py index 329e312..5e5decb 100755 --- a/mcsm/run_mcsm.py +++ b/mcsm/run_mcsm.py @@ -168,9 +168,6 @@ def write_result_url(holding_page, out_result_url): myfile.close() print(myfile) # return url - - - #======================================================================= #%% call functions mcsm_muts = format_data(infile_snps)