tanu/LSHTM_analysis
1
0
Fork 0
Code Issues Pull requests Releases Wiki Activity

saving ppi2 format script on embb_dev branch

Browse source
This commit is contained in:
Tanushree Tunstall 2021-10-28 12:22:46 +01:00
parent 3368e949e8
commit 45208f4c3d
1 changed files with 1 additions and 2 deletions
Download patch file Download diff file Expand all files Collapse all files

3
mcsm_ppi2/run_format_results_mcsm_ppi2.py
View file

@ -12,7 +12,6 @@ homedir = os.path.expanduser('~')
from format_results_mcsm_ppi2 import * from format_results_mcsm_ppi2 import *
######################################################################## ########################################################################
# TODO: add cmd line args
#%% command line args #%% command line args
arg_parser = argparse.ArgumentParser() arg_parser = argparse.ArgumentParser()
arg_parser.add_argument('-d', '--drug' , help = 'drug name (case sensitive)', default = None) arg_parser.add_argument('-d', '--drug' , help = 'drug name (case sensitive)', default = None)
@ -76,4 +75,4 @@ print('Finished writing file:'
, '\nExpected no. of cols:', len(mcsm_ppi2_df_f.columns) , '\nExpected no. of cols:', len(mcsm_ppi2_df_f.columns)
, '\n=============================================================') , '\n=============================================================')
#%%##################################################################### #%%#####################################################################